Table 1, Gene information in the HLA region (5, July 2004 present)































































































White background and black letters, light gray background and black letters, deep gray background and white letters and black background and white letters indicate "expressed gene", "gene candidate", non-coding gene (NC gene)" and "pseudogene", respectively. LocusID shows "LocusLink ID". mRNA and protein show accession numbers of GenBank.






































































































































































































Gene symbol LocusID Status mRNA Protein OMIM Note































































































CLASS I REGION




































































































HCP5P15 353021 Pseudogene X X
P5-1 pseudogene































































































HCG4P11 353020 Pseudogene X X
HLA complex group 4 pseudogene 11































































































HLA-F 3134 Exp. Gene NM_018950 NP_061823 143110 major histocompatibility complex, class I, F































































































RPL23AP1 6148 Pseudogene X X
ribosomal protein L23a pseudogene 1































































































MICE 4280 Pseudogene X X
MHC class I polypeptide-related sequence E pseudogene































































































HCG9P5 353019 Pseudogene X X
HCGIX-5 pseudogene































































































IFITM4P 340198 NC gene XM_294094 X
similar to Interferon-induced transmembrane protein 3































































































3.8-1.5 353010 Pseudogene X X
3.8-1.5 pseudogene































































































HCP5P14 353018 Pseudogene X X
P5-1 pseudogene































































































HCG4P10 353017 Pseudogene X X
HLA complex group 4 pseudogene 10































































































HLA-75 352962 Pseudogene X X
major histocompatibility complex, class I, pseudogene 75































































































HCP5P13 353016 Pseudogene X X
P5-1 pseudogene































































































HCG4 54435 Gene candidate NM_018985 NP_061858
HLA complex group 4































































































HLA-90 352963 Pseudogene X X
major histocompatibility complex, class I, pseudogene 90































































































HCG4P9 353014 Pseudogene X X
HLA complex group 4 pseudogene 9































































































RPL7AP7 353013 Pseudogene X X
ribosomal protein L7a pseudogene 7































































































MICG 352967 Pseudogene X X
MHC class I polypeptide-related sequence G pseudogene































































































HCG2P8 353012 Pseudogene X X
HCGII-8 pseudogene































































































HCP5P12 353011 Pseudogene X X
P5-1 pseudogene































































































HCG4P8 353005 Pseudogene X X
HLA complex group 4 pseudogene 8































































































P5-11 352989 Pseudogene X X
P5-1 pseudogene































































































HLA-G 3135 Exp. Gene NM_002127 NP_002118 142871 major histocompatibility complex, class I, G































































































HCGVIII-2 353000 Pseudogene X X
HCGVIII-2 pseudogene































































































MICF 352957 Pseudogene X X
MHC class I polypeptide-related sequence F pseudogene































































































3.8-1.4 353009 Pseudogene X X
3.8-1.4 pseudogene































































































HCP5P10 352990 Pseudogene X X
P5-1 pseudogene































































































HCG4P7 353004 Pseudogene X X
HLA complex group 4 pseudogene 7































































































P5-09 352991 Pseudogene X X
P5-1 pseudogene































































































HLA-H 3136 Pseudogene X X
major histocompatibility complex, class I, pseudogene H































































































P5-07 352992 Pseudogene X X
P5-1 pseudogene































































































HLA-16 352964 Pseudogene X X
major histocompatibility complex, class I, pseudogene 16































































































HCG2P7 80867 NC gene X81001 X
HCGII-7 pseudogene































































































3.8-1.3 353008 Pseudogene X X
3.8-1.2 pseudogene































































































HCP5P6 352993 Pseudogene X X
P5-1 pseudogene































































































HCG4P6 80868 NC gene X81005 X
HLA complex group 4 pseudogene 6































































































P5-05 352994 Pseudogene X X
P5-1 pseudogene































































































HLA-K 3138 Pseudogene X X
major histocompatibility complex, class I, K































































































HLA-21 352965 Pseudogene X X
major histocompatibility complex, class I, 21































































































HCG4P5 353003 Pseudogene X X
HLA complex group 4 pseudogene 5































































































P5-04 352996 Pseudogene X X
P5-1 pseudogene































































































HLA-A 3105 Exp. Gene NM_002116 NP_002107 142800 major histocompatibility complex, class I, A































































































HCP5P3 352997 Pseudogene X X
P5-1 pseudogene































































































HCG4P4 353002 Pseudogene X X
HLA complex group 4 pseudogene 4































































































HLA-80 352966 Pseudogene X X
major histocompatibility complex, class I, 80































































































HCG2P6 353006 Pseudogene X X
HCGII-6 pseudogene































































































MICD 4279 Pseudogene X X
MHC class I polypeptide-related sequence D pseudogene































































































HCG9 10255 Exp. Gene NM_005844 NP_005835
HLA complex group 9































































































3.8-1.2 353007 Pseudogene X X
3.8-1.3 pseudogene































































































HCP5P2 352998 Pseudogene X X
P5-1 pseudogene































































































HCG4P3 353001 Pseudogene X X
HLA complex group 4 pseudogene 3































































































HLA-J 3137 Pseudogene X X
major histocompatibility complex, class I, J































































































HCG8 80869 Gene candidate X92110 ?
HLA complex group 8































































































ETF1P1 6824 Pseudogene X X
eukaryotic translation termination factor 1 pseudogene 1































































































C6orf12 80862 Gene candidate AF032109 ?
chromosome 6 open reading frame 12































































































ZNRD1 30834 Exp. Gene NM_014596 NP_055411 607525 zinc ribbon domain containing, 1


































































































NM_170783 NP_740753

































































































PPP1R11 6992 Exp. Gene NM_021959 NP_068778 606670 protein phosphatase 1, regulatory (inhibitor) subunit 11


































































































NM_170781 NP_740751

































































































RNF39 80352 Exp. Gene NM_025236 NP_079512 607524 ring finger protein 39


































































































NM_170769 NP_739575




































































































NM_170770 NP_739576

































































































TRIM31 11074 Exp. Gene NM_007028 NP_008959
tripartite motif-containing 31


































































































NM_052816 NP_438111

































































































TRIM40 135644 Exp. Gene NM_138700 NP_619645
tripartite motif-containing 40































































































TRIM10 10107 Exp. Gene NM_006778 NP_006769 605701 tripartite motif-containing 10


































































































NM_052828 NP_439893

































































































TRIM15 89870 Exp. Gene NM_033229 NP_150232
tripartite motif-containing 15


































































































NM_052812 NP_434699

































































































TRIM26 7726 Exp. Gene NM_003449 NP_003440 600830 tripartite motif-containing 26































































































HLA-L 3139 Pseudogene X X
major histocompatibility complex, class I, L































































































LOC401245 401245 Gene candidate XM_379404 XP_379404
hypothetical gene supported by AK055657































































































TRIM39 56658 Exp. Gene NM_021253 NP_067076 605700 tripartite motif-containing 39


































































































NM_172016 NP_742013

































































































C6orf135 79897 Gene candidate NM_024839 NP_079115
chromosome 6 open reading frame 135































































































HLA-N 267014 Pseudogene X X
major histocompatibility complex, class I, 30































































































HCG2P5
Pseudogene X X
HCGII-5 pseudogene































































































HCG2P4 387501 Pseudogene X X
HCGII-4 pseudogene































































































MICC 221549 Pseudogene X X
MHC class I polypeptide-related sequence C pseudogene































































































HCG2P3
Pseudogene X X
HCGII-3 pseudogene































































































RANP1 221547 Pseudogene X X
RAN, member RAS oncogene family pseudogene 1































































































HLA-E 3133 Exp. Gene NM_005516 NP_005507 143010 major histocompatibility complex, class I, E































































































GNL1 2794 Exp. Gene NM_005275 NP_005266 143024 guanine nucleotide binding protein-like 1































































































PRR3 80742 Exp. Gene NM_025263 NP_079539
proline-rich polypeptide 3































































































ABCF1 23 Exp. Gene NM_001090 NP_001081 603429 ATP-binding cassette, sub-family F (GCN20), member 1































































































PPP1R10 5514 Exp. Gene NM_002714 NP_002705 603771 protein phosphatase 1, regulatory subunit 10































































































MRPS18B 28973 Exp. Gene NM_014046 NP_054765
mitochondrial ribosomal protein S18B































































































PROAP
Pseudogene X X
PROA pseudogene































































































C6orf134 79969 Gene candidate NM_024909 NP_079185
chromosome 6 open reading frame 134































































































C6orf136 221545 Gene candidate NM_145029 NP_659466
chromosome 6 open reading frame 136































































































DHX16 8449 Exp. Gene NM_003587 NP_003578 603405 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 16































































































KIAA1949 170954 Gene candidate XM_166376 XP_166376
KIAA1949 protein































































































NRM 11270 Exp. Gene NM_007243 NP_009174
nurim (nuclear envelope membrane protein)































































































RPL7AP
Pseudogene X X
ribosomal protein L7 pseudogene































































































MDC1 9656 Exp. Gene NM_014641 NP_055456 603405 mediator of DNA damage checkpoint 1































































































OK/SW-cl.56 203068 Exp. Gene NM_178014 NP_821133 606998 beta 5-tubulin































































































FLOT1 10211 Exp. Gene NM_005803 NP_005794
flotillin 1































































































IER3 8870 Exp. Gene NM_003897 NP_003888 602996 immediate early response 3


































































































NM_052815 NP_434702

































































































C6orf214 401247 Gene candidate NM_207496 NP_997379
chromosome 6 open reading frame 214































































































DDR1 780 Exp. Gene NM_001954 NP_001945 600408 discoidin domain receptor family, member 1


































































































NM_013993 NP_054699




































































































NM_013994 NP_054700

































































































GTF2H4 2968 Exp. Gene NM_001517 NP_001508 601760 general transcription factor IIH, polypeptide 4, 52kDa































































































VARS2L 57176 Exp. Gene NM_020442 NP_065175
valyl-tRNA synthetase 2-like































































































LOC389376 389376 Gene candidate XM_371808 ?
similar to GSGL541































































































DPCR1 135656 Exp. Gene NM_080870 NP_543146 604809 diffuse panbronchiolitis critical region































































































C6orf205 394263 Gene candidate XM_353396 XP_353397
LOC375501































































































C6orf15 29113 Exp. Gene NM_014070 NP_054789
chromosome 6 open reading frame 15































































































CDSN 1041 Exp. Gene NM_001264 NP_001255 602593 corneodesmosin































































































PSORS1C1 170679 Exp. Gene NM_014068 NP_054787
psoriasis susceptibility 1 candidate 1































































































PSORS1C2 170680 Exp. Gene NM_014069 NP_054788
psoriasis susceptibility 1 candidate 2































































































C6orf18 54535 Exp. Gene NM_019052 NP_061925 605310 chromosome 6 open reading frame 18































































































TCF19 6941 Exp. Gene NM_007109 NP_009040 600912 transcription factor 19 (SC1)































































































POU5F1 5460 Exp. Gene NM_002701 NP_002692 164177 POU domain, class 5, transcription factor 1































































































LOC253018 253018 Gene candidate NM_181717 NP_859068
hypothetical protein LOC253018































































































HCG2P2 387502 Pseudogene X X
HCGII-2 pseudogene































































































HCG9P3 387507 Pseudogene X X
HCGIX-3 pseudogene































































































HLA-C 3107 Exp. Gene NM_002117 NP_002108 142840 major histocompatibility complex, class I, C































































































HCG4P2 387504 Pseudogene X X
HLA complex group 4 pseudogene 3































































































KIAA0055P
Pseudogene X X
KIAA0055 pseudogene































































































RPL3P
Pseudogene X X
ribosomal protein L3 pseudogene































































































HCG2P1 387484 Pseudogene X X
HCGII-1 pseudogene































































































HLA-B 3106 Exp. Gene NM_005514 NP_005505 142830 major histocompatibility complex, class I, B































































































HCG4P1 387503 Pseudogene X X
HLA complex group 4 pseudogene 3































































































DHFRP
Pseudogene X X
dihydrofolate reductase (DHFR) pseudogene































































































HLA-S 267015 Pseudogene X X
major histocompatibility complex, class I, 17































































































HCP5P8 387508 Pseudogene X X
P5-1 pseudogene































































































HCG9P2 387506 Pseudogene X X
HCGIX-2 pseudogene































































































MICA 4276 Exp. Gene NM_000247 NP_000238 600169 MHC class I polypeptide-related sequence A































































































HLA-X 267016 Pseudogene X X
major histocompatibility complex, class I, X































































































HCP5 10866 Exp. Gene NM_006674 NP_006665 604676 HLA complex P5































































































3.8-1 352961 NC gene L29376 X
3.8-1.1 pseudogene































































































HCG9P1 387505 Pseudogene X X
HCGIX-1 pseudogene































































































MICB 4277 Exp. Gene NM_005931 NP_005922 602436 MHC class I polypeptide-related sequence B































































































CLASS III REGION




































































































PPIP9 5491 Pseudogene X X
peptidylprolyl isomerase (cyclophilin) pseudogene 9































































































LOC401250 401250 Gene candidate XM_376486 XP_376486
similar to coiled-coil domain 1 protein precursor































































































BAT1 7919 Exp. Gene NM_004640 NP_004631 142560 HLA-B associated transcript 1


































































































NM_080598 NP_542165

































































































ATP6V1G2 534 Exp. Gene NM_138282 NP_612139 606853 ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G isoform 2