ICT343 (2004) Materials

Lecture Notes

• Week 1 Lecture Notes [HTML / PDF]
  • Workshop: Perl Famil
  • No tutorial this week
• Week 2 Lecture Notes [HTML / PDF]
  • Workshop: Perl Programming
  • Laboratory: Perl Programming Exercise
• Week 3 Lecture Notes [HTML / PDF]
  • Workshop: OpenSource, BioProjects and BioPerl Programming
  • Laboratory: BioPerl Programming Exercise
• Week 4 Lecture Notes [HTML / PDF]
  • Workshop: feature extraction and database searching
  • Laboratory: BioPerl Programming Exercise
• Week 5 Lecture Notes [HTML / PDF]
  • Workshop: Bugs and Statistics
  • Laboratory: Assignment 1
• Week 6 Lecture Notes [PDF]
• Workshop: Sequence Alignment
• Laboratory: Sequence Alignment
• Week 7 Lecture Notes: More Perl [PDF]
• Workshop: The Perl environment
• Laboratory: Profiling/compiling with perlcc
• Week 8 Lecture Notes: BioSQL [PDF]
  • Workshop: Installing and populating BioSQL
  • Laboratory: Retrieving data from MySQL
• Week 9 Lecture Notes [PDF]
  • Workshop: Graphic HOWTO
  • Laboratory: Genscan
• Week 10 Lecture Notes [PDF]
  • Workshop: GrendelClient (this may not be accessible outside the CBBC - firewall issues - included for completeness. Do the lab only!)
  • Laboratory: Simple Pipeline
• Week 11 Lecture Notes [PDF]]
  • Workshop: bioperl-microarray, R-project
  • Laboratory: Large datafile processing task
• Week 12 Lecture Notes [PDF]
  • Workshop: EMBOSS and remote program execution
  • Laboratory: EMBOSS and remote program execution
• Week 13 Lecture Notes [PDF]
  • No Workshop this week.
  • No Tutorial this week.

• Assignments

  • Cover Sheet
  • Assignment 1 - Due 1.30pm, Wednesday, Week 6
  • Assignment 2 - Due 12.00pm, Monday, Week 12